Rstudio, как заставить работать установку пакета stringi? Все хорошо, пока dyn.load просто не выйдет из строя

В конце концов, после обновления до последней версии: мое обновление / обновления Ubuntu 16.04LTS, моя версия R, моя версия Rstudio-server, моя версия libicu-dev подтвердили, что anaconda предоставляет мой python, но не мой язык R. Что еще может помочь? Этот пакет stringi также может быть причиной моих новых проблем (раньше проблем не было): невозможность создать документ r markdown (похоже, Knittr использует stringi), блокнот jupyter с языком R, невозможность установить ggplot2 и т.д.

g++ уже самая новая версия (4:5.3.1-1ubuntu1)

libicu-dev уже самая новая версия (55.1-7ubuntu0.2)

Вот вывод консоли rstudio (длинный):

R version 3.4.2 (2017-09-28) -- "Short Summer"
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> install.packages("stringi")
Installing package into ‘/home/ga/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/src/contrib/stringi_1.1.5.tar.gz'
Content type 'application/x-gzip' length 3645872 bytes (3.5 MB)
==================================================
downloaded 3.5 MB

* installing *source* package ‘stringi’ ...
** package ‘stringi’ successfully unpacked and MD5 sums checked
checking for local ICUDT_DIR... icu55/data
checking for R_HOME... /usr/lib/R
checking for R... /usr/lib/R/bin/R
checking for R >= 3.1.0 for C++11 use... yes
checking for R < 3.4.0 for CXX1X flag use... no
checking for cat... /bin/cat
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... g++ -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking elf.h usability... yes
checking elf.h presence... yes
checking for elf.h... yes
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=gnu++11 accepts -g... yes
checking whether the C++ compiler supports the long long type... yes
checking whether the compiler implements namespaces... yes
checking whether the compiler supports Standard Template Library... yes
checking whether std::map is available... yes
checking for pkg-config... /usr/bin/pkg-config
checking with pkg-config for the system ICU4C... 55.1
checking for ICU4C >= 52... yes
checking for additional required CPPFLAGS, LDFLAGS, and LIBS... done
checking whether we may build an ICU4C-based project... yes
checking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes
checking for available ICU data library (ucnv, uloc, utrans)... yes
checking for available ICU data library (ucol)... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/uconfig_local.h
config.status: creating src/install.libs.R

*** stringi configure summary:
    ICU_FOUND=1
    STRINGI_CXXSTD=CXX_STD=CXX11
    STRINGI_CFLAGS=   -fpic
    STRINGI_CPPFLAGS=-I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H
    STRINGI_CXXFLAGS=   -fpic
    STRINGI_LDFLAGS=-L/usr/lib/x86_64-linux-gnu  
    STRINGI_LIBS=-licui18n -licuuc -licudata  

*** compiler settings used:
    CC=gcc -std=gnu99
    CPP=g++ -E
    LD=g++
    CFLAGS=-I/usr/lib/x86_64-linux-gnu -fpic  
    CPPFLAGS=   -UDEBUG -DNDEBUG
    CXX=g++ -std=gnu++11
    CXXFLAGS=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic  
    LDFLAGS=  
    LIBS=  

** libs
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_brkiter.cpp -o stri_brkiter.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_collator.cpp -o stri_collator.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_common.cpp -o stri_common.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_compare.cpp -o stri_compare.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_base.cpp -o stri_container_base.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_bytesearch.cpp -o stri_container_bytesearch.o

...(отрывок)...

g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_extract.cpp -o stri_search_fixed_extract.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_locate.cpp -o stri_search_fixed_locate.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_replace.cpp -o stri_search_fixed_replace.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_split.cpp -o stri_search_fixed_split.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_subset.cpp -o stri_search_fixed_subset.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_startsendswith.cpp -o stri_search_fixed_startsendswith.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_in.cpp -o stri_search_in.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_other_replace.cpp -o stri_search_other_replace.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_other_split.cpp -o stri_search_other_split.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_count.cpp -o stri_search_regex_count.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_detect.cpp -o stri_search_regex_detect.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_extract.cpp -o stri_search_regex_extract.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_locate.cpp -o stri_search_regex_locate.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_match.cpp -o stri_search_regex_match.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_replace.cpp -o stri_search_regex_replace.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_split.cpp -o stri_search_regex_split.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_subset.cpp -o stri_search_regex_subset.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_sort.cpp -o stri_sort.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_stats.cpp -o stri_stats.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_stringi.cpp -o stri_stringi.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_sub.cpp -o stri_sub.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_test.cpp -o stri_test.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_time_zone.cpp -o stri_time_zone.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_time_calendar.cpp -o stri_time_calendar.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_time_symbols.cpp -o stri_time_symbols.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_time_format.cpp -o stri_time_format.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_trans_casemap.cpp -o stri_trans_casemap.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_trans_other.cpp -o stri_trans_other.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_trans_normalization.cpp -o stri_trans_normalization.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_trans_transliterate.cpp -o stri_trans_transliterate.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_ucnv.cpp -o stri_ucnv.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_uloc.cpp -o stri_uloc.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_utils.cpp -o stri_utils.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_wrap.cpp -o stri_wrap.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -L/usr/lib/x86_64-linux-gnu -lgsl -o stringi.so stri_brkiter.o stri_collator.o stri_common.o stri_compare.o stri_container_base.o stri_container_bytesearch.o stri_container_listint.o stri_container_listraw.o stri_container_listutf8.o stri_container_regex.o stri_container_usearch.o stri_container_utf16.o stri_container_utf8.o stri_container_utf8_indexable.o stri_encoding_conversion.o stri_encoding_detection.o stri_encoding_management.o stri_escape.o stri_exception.o stri_ICU_settings.o stri_join.o stri_length.o stri_pad.o stri_prepare_arg.o stri_random.o stri_reverse.o stri_search_class_count.o stri_search_class_detect.o stri_search_class_extract.o stri_search_class_locate.o stri_search_class_replace.o stri_search_class_split.o stri_search_class_startsendswith.o stri_search_class_subset.o stri_search_class_trim.o stri_search_common.o stri_search_coll_count.o stri_search_coll_detect.o stri_search_coll_extract.o stri_search_coll_locate.o stri_search_coll_replace.o stri_search_coll_split.o stri_search_coll_startsendswith.o stri_search_coll_subset.o stri_search_boundaries_count.o stri_search_boundaries_extract.o stri_search_boundaries_locate.o stri_search_boundaries_split.o stri_search_fixed_count.o stri_search_fixed_detect.o stri_search_fixed_extract.o stri_search_fixed_locate.o stri_search_fixed_replace.o stri_search_fixed_split.o stri_search_fixed_subset.o stri_search_fixed_startsendswith.o stri_search_in.o stri_search_other_replace.o stri_search_other_split.o stri_search_regex_count.o stri_search_regex_detect.o stri_search_regex_extract.o stri_search_regex_locate.o stri_search_regex_match.o stri_search_regex_replace.o stri_search_regex_split.o stri_search_regex_subset.o stri_sort.o stri_stats.o stri_stringi.o stri_sub.o stri_test.o stri_time_zone.o stri_time_calendar.o stri_time_symbols.o stri_time_format.o stri_trans_casemap.o stri_trans_other.o stri_trans_normalization.o stri_trans_transliterate.o stri_ucnv.o stri_uloc.o stri_utils.o stri_wrap.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/R/lib -lR
installing via 'install.libs.R' to /home/ga/R/x86_64-pc-linux-gnu-library/3.4/stringi
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Error: package or namespace load failed for ‘stringi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/ga/R/x86_64-pc-linux-gnu-library/3.4/stringi/libs/stringi.so':
  /home/ga/R/x86_64-pc-linux-gnu-library/3.4/stringi/libs/stringi.so: undefined symbol: _ZTIN6icu_558ByteSinkE
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/ga/R/x86_64-pc-linux-gnu-library/3.4/stringi’
Warning in install.packages :
  installation of package ‘stringi’ had non-zero exit status

Есть ли какие-то другие диагностики, чтобы попробовать? Кстати, stringi отлично работал в R3.3, но теперь у меня R3.4.


person Geoffrey Anderson    schedule 13.10.2017    source источник


Ответы (1)


Эта ошибка:

Error: package or namespace load failed for ‘stringi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/ga/R/x86_64-pc-linux-gnu-library/3.4/stringi/libs/stringi.so':
  /home/ga/R/x86_64-pc-linux-gnu-library/3.4/stringi/libs/stringi.so: undefined symbol: _ZTIN6icu_558ByteSinkE

означает, что требуемый символ не найден. c++filt помогает нам разобрать символ:

$ c++filt _ZTIN6icu_558ByteSinkE
typeinfo for icu_55::ByteSink

Вероятно, это означает, что библиотека ICU (версия 55), используемая stringi во время установки, не предоставляет этот символ.

Что бы это ни стоило, у меня установка работает нормально с текущей версией Ubuntu 16.04. Вот мой результат настройки:

checking for local ICUDT_DIR... icu55/data
checking for R_HOME... /usr/lib/R
checking for R... /usr/lib/R/bin/R
checking for R >= 3.1.0 for C++11 use... yes
checking for R < 3.4.0 for CXX1X flag use... no
checking for cat... /bin/cat
checking for gcc... gcc-5
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-5 accepts -g... yes
checking for gcc-5 option to accept ISO C89... none needed
checking how to run the C preprocessor... g++-5 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking elf.h usability... yes
checking elf.h presence... yes
checking for elf.h... yes
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=c++0x accepts -g... yes
checking whether the C++ compiler supports the long long type... yes
checking whether the compiler implements namespaces... yes
checking whether the compiler supports Standard Template Library... yes
checking whether std::map is available... yes
checking for pkg-config... /usr/bin/pkg-config
checking with pkg-config for the system ICU4C... 55.1
checking for ICU4C >= 52... yes
checking for additional required CPPFLAGS, LDFLAGS, and LIBS... done
checking whether we may build an ICU4C-based project... yes
checking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes
checking for available ICU data library (ucnv, uloc, utrans)... yes
checking for available ICU data library (ucol)... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/uconfig_local.h
config.status: creating src/install.libs.R

*** stringi configure summary:
    ICU_FOUND=1
    STRINGI_CXXSTD=CXX_STD=CXX11
    STRINGI_CFLAGS=   -fpic
    STRINGI_CPPFLAGS=-I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H
    STRINGI_CXXFLAGS=   -fpic
    STRINGI_LDFLAGS=-L/usr/lib/x86_64-linux-gnu  
    STRINGI_LIBS=-licui18n -licuuc -licudata  

*** compiler settings used:
    CC=gcc-5
    CPP=g++-5 -E
    LD=g++-5
    CFLAGS=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic  
    CPPFLAGS=   -UDEBUG -DNDEBUG
    CXX=g++ -std=c++0x
    CXXFLAGS=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic  
    LDFLAGS=  
    LIBS=  

Единственное отличие, которое я вижу, это то, что в моем случае я использую g++ -std=c++0x; ваш, кажется, использует g++ -std=gnu++11. Интересно, это может быть причиной? Мне также интересно, почему stringi использует здесь g++, а не g++-5; если вы установили другой компилятор по умолчанию, это может быть причиной.

person Kevin Ushey    schedule 14.10.2017
comment
Вы можете получить готовый r-cran-stringi: см. здесь (хотя это может быть, конечно, более старая версия). Проблема icu52 и icu55 была, например, ответьте и здесь. - person Dirk Eddelbuettel; 14.10.2017